If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ), 'gf_id' => 'HOM05D000904', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000904' ), 'data_identifier' => 'HOM05D000904', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000904', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '662', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31590' => 'bna', 'A06p06970' => 'bna', 'A06p30810' => 'bna', 'A07p11680' => 'bna', 'A08p26140' => 'bna', 'A08p34030' => 'bna', 'A09p20010' => 'bna', 'Aa31LG1G4600' => 'aar', 'Aa31LG1G4630' => 'aar', 'Aa31LG4G14300' => 'aar', 'Aa31LG9G12890' => 'aar', 'Aa31sc158G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1372' => 'aag', 'Actinidia00820' => 'ach', 'Actinidia01632' => 'ach', 'Actinidia01633' => 'ach', 'Actinidia01634' => 'ach', 'Actinidia11330' => 'ach', 'Actinidia15550' => 'ach', 'Actinidia26192' => 'ach', 'Actinidia26193' => 'ach', 'Actinidia39880' => 'ach', 'Actinidia39881' => 'ach', 'Ah.01g004640' => 'amhyb', 'Ah.08g210270' => 'amhyb', 'Ah.08g210990' => 'amhyb', 'Ah.09g231850' => 'amhyb', 'Ah.14g085600' => 'amhyb', 'AL1G21040' => 'aly', 'AL1G21050' => 'aly', 'AL1G41170' => 'aly', 'AL5G23130' => 'aly', 'AL8G18200' => 'aly', 'Aqoxy1G00953' => 'aox', 'Aqoxy2G01428' => 'aox', 'Aqoxy2G01430' => 'aox', 'Aqoxy2G01520' => 'aox', 'Aqoxy3G01420' => 'aox', 'Aqoxy5G00733' => 'aox', 'Aqoxy5G01864' => 'aox', 'Aqoxy6G00043' => 'aox', 'Aqoxy6G03040' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07Q55L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BJ6UQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87EYQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0F858' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE80VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWP77A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQW11P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3DQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0D4VX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHGQ24' => 'arhy', 'AT1G10310' => 'ath', 'AT1G10320' => 'ath', 'AT1G27650' => 'ath', 'AT3G44785' => 'ath', 'AT5G42820' => 'ath', 'ATR0189G001' => 'atr', 'ATR0605G350' => 'atr', 'ATR0749G030' => 'atr', 'ATR0820G024' => 'atr', 'ATR1089G061' => 'atr', 'ATR1089G094' => 'atr', 'Atru.chr13.33' => 'acertr', 'Atru.chr3.2070' => 'acertr', 'Atru.chr6.324' => 'acertr', 'Atru.chr6.331' => 'acertr', 'Atru.chr8.1642' => 'acertr', 'AUR62006253' => 'cqu', 'AUR62021311' => 'cqu', 'AUR62022331' => 'cqu', 'AUR62023944' => 'cqu', 'AUR62028504' => 'cqu', 'AUR62033228' => 'cqu', 'AUR62033586' => 'cqu', 'AUR62034943' => 'cqu', 'AUR62038295' => 'cqu', 'AUR62041413' => 'cqu', 'AUR62043443' => 'cqu', 'BcaB03g13977' => 'bca', 'BcaB07g31041' => 'bca', 'BcaC01g01584' => 'bca', 'BcaC01g06937' => 'bca', 'BcaC03g16502' => 'bca', 'BcaC04g21967' => 'bca', 'BcaC05g24900' => 'bca', 'BcaC06g31746' => 'bca', 'BcaC06g35303' => 'bca', 'BcaNung05165' => 'bca', 'BcaNung05166' => 'bca', 'BcaNung05168' => 'bca', 'BcaNung05227' => 'bca', 'BcaNung05228' => 'bca', 'BolC2t10366H' => 'bol', 'BolC3t19694H' => 'bol', 'BolC5t29598H' => 'bol', 'BolC7t42270H' => 'bol', 'BolC8t48998H' => 'bol', 'BolC9t55438H' => 'bol', 'BraA07t28953Z' => 'bra', 'BraA08t34564Z' => 'bra', 'BraA08t35316Z' => 'bra', 'BraA09t37610Z' => 'bra', 'C02p43180' => 'bna', 'C03p74410' => 'bna', 'C05p08470' => 'bna', 'C05p08480' => 'bna', 'C05p27010' => 'bna', 'C07p17640' => 'bna', 'C08p13580' => 'bna', 'C09p25390' => 'bna', 'CAN.G1138.10' => 'can', 'CAN.G386.32' => 'can', 'CAN.G644.36' => 'can', 'CAN.G855.46' => 'can', 'CAN.G855.47' => 'can', 'CANSAT01G3012' => 'cansat', 'CANSAT54G1527' => 'cansat', 'CANSAT56G0278' => 'cansat', 'CANSAT80G1629' => 'cansat', 'CARHR009050' => 'chi', 'CARHR010440' => 'chi', 'CARHR010450' => 'chi', 'CARHR070920' => 'chi', 'CARHR070930' => 'chi', 'CARHR134160' => 'chi', 'CARHR151340' => 'chi', 'CARHR181430' => 'chi', 'Carub.0001s0972' => 'cru', 'Carub.0001s0973' => 'cru', 'Carub.0001s0974' => 'cru', 'Carub.0001s2615' => 'cru', 'Carub.0005s1050' => 'cru', 'Ca_00027_v3' => 'car', 'Ca_01683_v3' => 'car', 'Ca_08964_v3' => 'car', 'Ca_12498_v3' => 'car', 'Ca_13531_v3' => 'car', 'CBR_g28817' => 'cbr', 'CBR_g31099' => 'cbr', 'CBR_g9098' => 'cbr', 'Cc00_g09220' => 'ccan', 'Cc00_g18120' => 'ccan', 'Cc00_g34180' => 'ccan', 'Cc01_g09880' => 'ccan', 'Cc02_g23520' => 'ccan', 'Cc02_g23530' => 'ccan', 'Cc02_g23540' => 'ccan', 'Cc03_g10110' => 'ccan', 'Cc06_g05160' => 'ccan', 'Cc06_g05170' => 'ccan', 'Cc10_g00170' => 'ccan', 'CDE02G4514' => 'cde', 'CDE02G4746' => 'cde', 'CDE05G0469' => 'cde', 'CDE05G0691' => 'cde', 'CDE06G0324' => 'cde', 'CDE08G0546' => 'cde', 'CDE08G1006' => 'cde', 'Cfa004448' => 'cfa', 'Cfa004449' => 'cfa', 'Cfa010086' => 'cfa', 'Cfa014152' => 'cfa', 'Ciclev10002114m.g' => 'ccl', 'Ciclev10003384m.g' => 'ccl', 'Ciclev10003415m.g' => 'ccl', 'Ciclev10010745m.g' => 'ccl', 'Ciclev10012216m.g' => 'ccl', 'Ciclev10013954m.g' => 'ccl', 'Ciclev10024033m.g' => 'ccl', 'Ciclev10029043m.g' => 'ccl', 'Ciclev10029935m.g' => 'ccl', 'Ciclev10030365m.g' => 'ccl', 'CiPaw.05G001900' => 'cil', 'CiPaw.05G002000' => 'cil', 'CiPaw.07G131400' => 'cil', 'CiPaw.08G078300' => 'cil', 'CiPaw.09G008100' => 'cil', 'CiPaw.10G004900' => 'cil', 'CiPaw.13G141300' => 'cil', 'ClCG01G012750' => 'cla', 'ClCG04G009760' => 'cla', 'ClCG10G007430' => 'cla', 'ClCG10G007450' => 'cla', 'ClCG11G000250' => 'cla', 'ClCG11G000320' => 'cla', 'ClCG11G000340' => 'cla', 'ClCG11G000350' => 'cla', 'ClCG11G000390' => 'cla', 'ClCG11G000420' => 'cla', 'ClCG11G000610' => 'cla', 'ClCG11G019120' => 'cla', 'COL.COLO4_06085' => 'col', 'COL.COLO4_19285' => 'col', 'COL.COLO4_19287' => 'col', 'COL.COLO4_22855' => 'col', 'COL.COLO4_22860' => 'col', 'Cpa.g.c24967.7' => 'cpa', 'Cpa.g.sc173.41' => 'cpa', 'Cpa.g.sc192.24' => 'cpa', 'Cpa.g.sc47.49' => 'cpa', 'Cre06.g250950' => 'cre', 'CsaV3_1G014490' => 'csa', 'CsaV3_1G039100' => 'csa', 'CsaV3_1G039110' => 'csa', 'CsaV3_1G039120' => 'csa', 'CsaV3_3G006640' => 'csa', 'CsaV3_4G037710' => 'csa', 'CsaV3_5G013920' => 'csa', 'CsaV3_5G013930' => 'csa', 'CsaV3_5G013950' => 'csa', 'CsaV3_5G013960' => 'csa', 'CsaV3_5G014070' => 'csa', 'CsaV3_5G015290' => 'csa', 'CsaV3_5G015540' => 'csa', 'CsaV3_5G015550' => 'csa', 'CsaV3_5G015620' => 'csa', 'CsaV3_6G040400' => 'csa', 'CsaV3_UNG162230' => 'csa', 'CSS0023799' => 'camsi', 'CSS0027306' => 'camsi', 'CSS0030174' => 'camsi', 'CSS0030434' => 'camsi', 'CSS0034059' => 'camsi', 'CSS0034231' => 'camsi', 'CSS0036471' => 'camsi', 'DCAR_001720' => 'dca', 'DCAR_010725' => 'dca', 'DCAR_015481' => 'dca', 'DCAR_020780' => 'dca', 'DCAR_031994' => 'dca', 'DCAR_031995' => 'dca', 'Dinv05509' => 'din', 'Dinv19822' => 'din', 'Dinv21264' => 'din', 'Dinv23341' => 'din', 'Dinv29420' => 'din', 'Dinv29628' => 'din', 'Dinv29675' => 'din', 'Dinv29676' => 'din', 'Duzib133G0443' => 'dzi', 'Duzib138G1853' => 'dzi', 'Duzib160G0493' => 'dzi', 'Duzib170G0329' => 'dzi', 'Duzib192G0673' => 'dzi', 'Duzib211G0071' => 'dzi', 'Duzib235G0168' => 'dzi', 'ECA238G3788' => 'eca', 'ECA240G4044' => 'eca', 'ECA240G4408' => 'eca', 'ECA248G0469' => 'eca', 'ECA248G2699' => 'eca', 'EL10Ac1g01680' => 'bvu', 'EL10Ac3g06368' => 'bvu', 'EL10Ac3g06369' => 'bvu', 'EL10Ac4g08852' => 'bvu', 'EL10Ac5g12512' => 'bvu', 'EL10Ac7g16830' => 'bvu', 'EL10Ac7g16999' => 'bvu', 'EL10Ac9g20741' => 'bvu', 'EL10Ac9g21070' => 'bvu', 'Eucgr.B03897' => 'egr', 'Eucgr.F03613' => 'egr', 'Eucgr.G00080' => 'egr', 'Eucgr.G00321' => 'egr', 'Eucgr.I02792' => 'egr', 'Eucgr.I02793' => 'egr', 'Eucgr.I02794' => 'egr', 'Eucgr.K02078' => 'egr', 'FAN02G4341' => 'fan', 'FAN04G0098' => 'fan', 'FAN04G1787' => 'fan', 'FAN05G3396' => 'fan', 'FAN08G0588' => 'fan', 'FAN08G3504' => 'fan', 'FAN09G2644' => 'fan', 'FAN11G2227' => 'fan', 'FAN13G2306' => 'fan', 'FAN14G3478' => 'fan', 'FAN16G0634' => 'fan', 'FAN18G0255' => 'fan', 'FAN18G2944' => 'fan', 'FAN18G3529' => 'fan', 'FvH4_3g29970' => 'fve', 'FvH4_4g03101' => 'fve', 'FvH4_5g26450' => 'fve', 'FvH4_5g27970' => 'fve', 'FvH4_5g28020' => 'fve', 'FvH4_6g17780' => 'fve', 'Glyma.03G006500' => 'gma', 'Glyma.03G190600' => 'gma', 'Glyma.07G159900' => 'gma', 'Glyma.08G162800' => 'gma', 'Glyma.12G181300' => 'gma', 'Glyma.15G244700' => 'gma', 'Glyma.15G244800' => 'gma', 'Glyma.19G191100' => 'gma', 'Glyma.20G006800' => 'gma', 'Gohir.A03G081600' => 'ghi', 'Gohir.A06G100404' => 'ghi', 'Gohir.A08G062200' => 'ghi', 'Gohir.A08G188100' => 'ghi', 'Gohir.A09G092500' => 'ghi', 'Gohir.A10G003300' => 'ghi', 'Gohir.D02G105600' => 'ghi', 'Gohir.D02G105700' => 'ghi', 'Gohir.D06G101100' => 'ghi', 'Gohir.D06G102600' => 'ghi', 'Gohir.D07G110950' => 'ghi', 'Gohir.D08G071332' => 'ghi', 'Gohir.D08G206500' => 'ghi', 'Gohir.D09G092600' => 'ghi', 'Gohir.D10G003300' => 'ghi', 'Gorai.001G119200' => 'gra', 'Gorai.004G075300' => 'gra', 'Gorai.004G218700' => 'gra', 'Gorai.005G120000' => 'gra', 'Gorai.005G120100' => 'gra', 'Gorai.006G109200' => 'gra', 'Gorai.010G117600' => 'gra', 'Gorai.010G129200' => 'gra', 'Gorai.011G003700' => 'gra', 'GSVIVG01013445001' => 'vvi', 'GSVIVG01023150001' => 'vvi', 'GSVIVG01023151001' => 'vvi', 'GSVIVG01033771001' => 'vvi', 'HanXRQChr01g0028321' => 'han', 'HanXRQChr02g0055021' => 'han', 'HanXRQChr05g0132421' => 'han', 'HanXRQChr06g0183031' => 'han', 'HanXRQChr12g0381671' => 'han', 'HanXRQChr12g0381691' => 'han', 'HanXRQChr13g0409931' => 'han', 'Haze_09988' => 'cav', 'Haze_19530' => 'cav', 'Haze_22876' => 'cav', 'Haze_23457' => 'cav', 'Hma1.2p1_0052F.1_g029960' => 'hma', 'Hma1.2p1_0651F.1_g195810' => 'hma', 'Hma1.2p1_3092F.1_g332580' => 'hma', 'HPP92_011424' => 'vpl', 'HPP92_011425' => 'vpl', 'HPP92_011434' => 'vpl', 'HPP92_017805' => 'vpl', 'HPP92_024399' => 'vpl', 'Hund00792' => 'sun', 'Hund00892' => 'sun', 'Hund04067' => 'sun', 'Hund15393' => 'sun', 'Lalb_Chr01g0004731' => 'lal', 'Lalb_Chr02g0155111' => 'lal', 'Lalb_Chr06g0173391' => 'lal', 'Lalb_Chr07g0176801' => 'lal', 'Lalb_Chr20g0112211' => 'lal', 'Lalb_Chr20g0123811' => 'lal', 'Lalb_Chr20g0123821' => 'lal', 'Lalb_Chr21g0315691' => 'lal', 'Lalb_Chr21g0315711' => 'lal', 'Lalb_Chr22g0350601' => 'lal', 'Lj1A220T23' => 'lonja', 'Lj1g0014738' => 'lja', 'Lj2g0024539' => 'lja', 'Lj3A1004G90' => 'lonja', 'Lj3g0004634' => 'lja', 'Lj3g0023331' => 'lja', 'Lj4g0025399' => 'lja', 'Lj5A282G72' => 'lonja', 'Lj5A282T77' => 'lonja', 'Lj5A282T78' => 'lonja', 'Lj5g0025119' => 'lja', 'Lsat_1_v5_gn_1_50340' => 'lsa', 'Lsat_1_v5_gn_2_21421' => 'lsa', 'Lsat_1_v5_gn_6_42581' => 'lsa', 'Lsat_1_v5_gn_9_121801' => 'lsa', 'Lsat_1_v5_gn_9_121820' => 'lsa', 'Manes.05G129600' => 'mes', 'Manes.07G028700' => 'mes', 'Manes.08G020350' => 'mes', 'Manes.09G060572' => 'mes', 'Manes.10G111800' => 'mes', 'Manes.11G156300' => 'mes', 'Mapoly0079s0042' => 'mpo', 'Mapoly0091s0013' => 'mpo', 'MBI01_g39278_MAGBIO' => 'mbi', 'MBI04_g42542_MAGBIO' => 'mbi', 'MBI04_g42543_MAGBIO' => 'mbi', 'MBI06_g32155_MAGBIO' => 'mbi', 'MBI17_g30588_MAGBIO' => 'mbi', 'MBI19_g32709_MAGBIO' => 'mbi', 'MCO04G505' => 'mco', 'MCO07G014' => 'mco', 'MCO08G156' => 'mco', 'MD00G1150600' => 'mdo', 'MD03G1134000' => 'mdo', 'MD03G1134200' => 'mdo', 'MD05G1262900' => 'mdo', 'MD05G1263000' => 'mdo', 'MD08G1247500' => 'mdo', 'MD11G1156400' => 'mdo', 'MD12G1016800' => 'mdo', 'MD12G1094300' => 'mdo', 'MD14G1014800' => 'mdo', 'MD15G1442200' => 'mdo', 'MD15G1442300' => 'mdo', 'Medtr1g035130' => 'mtr', 'Medtr2g005450' => 'mtr', 'Medtr2g084715' => 'mtr', 'Medtr4g066050' => 'mtr', 'Medtr4g070490' => 'mtr', 'Medtr4g070500' => 'mtr', 'Medtr4g134660' => 'mtr', 'Medtr7g103630' => 'mtr', 'MELO3C004799.2' => 'cme', 'MELO3C015337.2' => 'cme', 'MELO3C016469.2' => 'cme', 'MELO3C017065.2' => 'cme', 'MELO3C022941.2' => 'cme', 'MELO3C024515.2' => 'cme', 'MELO3C025330.2' => 'cme', 'MELO3C026450.2' => 'cme', 'MELO3C026455.2' => 'cme', 'MELO3C026468.2' => 'cme', 'MELO3C027175.2' => 'cme', 'MELO3C034313.2' => 'cme', 'MELO3C034532.2' => 'cme', 'Migut.B00725' => 'egut', 'Migut.B00726' => 'egut', 'Migut.B00727' => 'egut', 'Migut.L01751' => 'egut', 'Migut.N02517' => 'egut', 'Migut.N02995' => 'egut', 'MSTRG.12353' => 'ama', 'MSTRG.16471' => 'ama', 'MSTRG.22075' => 'ama', 'MSTRG.5805' => 'ama', 'Nitab4.5_0000132g0230' => 'nta', 'Nitab4.5_0000227g0160' => 'nta', 'Nitab4.5_0000464g0080' => 'nta', 'Nitab4.5_0001057g0010' => 'nta', 'Nitab4.5_0001453g0100' => 'nta', 'Nitab4.5_0004668g0060' => 'nta', 'Nitab4.5_0007303g0020' => 'nta', 'Nitab4.5_0008306g0010' => 'nta', 'Nitab4.5_0008306g0050' => 'nta', 'Nitab4.5_0022223g0010' => 'nta', 'Nn5g27250' => 'nnu', 'Nn5g27347' => 'nnu', 'Nn6g31595' => 'nnu', 'Nn6g35063' => 'nnu', 'Oeu008378.1' => 'oeu', 'Oeu008379.1' => 'oeu', 'Oeu023855.2' => 'oeu', 'Oeu035768.1' => 'oeu', 'Oeu043612.1' => 'oeu', 'Oeu043613.1' => 'oeu', 'Oeu050175.1' => 'oeu', 'Oeu064735.1' => 'oeu', 'Os01g0667800' => 'osa', 'Os02g0557500' => 'osa', 'Os02g0557700' => 'osa', 'Os05g0564200' => 'osa', 'Os09g0491756' => 'osa', 'Peaxi162Scf00011g01832' => 'pax', 'Peaxi162Scf00110g00198' => 'pax', 'Peaxi162Scf00110g01922' => 'pax', 'Peaxi162Scf00385g00074' => 'pax', 'Peaxi162Scf00757g00113' => 'pax', 'Peaxi162Scf00789g00529' => 'pax', 'PGR031G0758' => 'pgr', 'PGR042G3242' => 'pgr', 'PGSC0003DMG400020705' => 'stu', 'PGSC0003DMG400026524' => 'stu', 'PGSC0003DMG400028265' => 'stu', 'PGSC0003DMG400041656' => 'stu', 'PGSC0003DMG400041923' => 'stu', 'PGSC0003DMG401024871' => 'stu', 'Phvul.001G186200' => 'pvu', 'Phvul.003G009100' => 'pvu', 'Phvul.003G075700' => 'pvu', 'Phvul.005G127700' => 'pvu', 'Phvul.005G127800' => 'pvu', 'Phvul.006G221300' => 'pvu', 'Potri.002G003000' => 'ptr', 'Potri.004G188900' => 'ptr', 'Potri.004G228533' => 'ptr', 'Potri.004G228600' => 'ptr', 'Potri.005G258000' => 'ptr', 'Potri.006G116700' => 'ptr', 'Potri.009G149600' => 'ptr', 'Pp3c16_15410' => 'ppa', 'Pp3c25_1230' => 'ppa', 'Pp3c3_25240' => 'ppa', 'PRCOL_00000533' => 'pco', 'Prupe.1G584900' => 'ppe', 'Prupe.1G585000' => 'ppe', 'Prupe.6G118600' => 'ppe', 'Prupe.7G118600' => 'ppe', 'Psat1g223160' => 'psa', 'Psat3g036760' => 'psa', 'Psat4g001040' => 'psa', 'Psat5g254280' => 'psa', 'Psat6g132720' => 'psa', 'Psat6g132760' => 'psa', 'PSO063G1559' => 'pso', 'PSO063G4017' => 'pso', 'PSO210G6890' => 'pso', 'PSO210G7568' => 'pso', 'PSO339G4840' => 'pso', 'PSO339G6198' => 'pso', 'PSO339G6544' => 'pso', 'PSO384G0538' => 'pso', 'PSO384G1979' => 'pso', 'PSO421G0485' => 'pso', 'PSO447G0087' => 'pso', 'PSO832G1346' => 'pso', 'QL02p016028' => 'qlo', 'QL02p103277' => 'qlo', 'QL07p040666' => 'qlo', 'QL10p041408' => 'qlo', 'RcHm_v2.0_Chr3g0472021' => 'rch', 'RcHm_v2.0_Chr5g0022941' => 'rch', 'RcHm_v2.0_Chr5g0055381' => 'rch', 'RcHm_v2.0_Chr5g0055431' => 'rch', 'RcHm_v2.0_Chr6g0272511' => 'rch', 'RcHm_v2.0_Chr6g0272531' => 'rch', 'RcHm_v2.0_Chr6g0289931' => 'rch', 'RcHm_v2.0_Chr6g0289941' => 'rch', 'RcHm_v2.0_Chr7g0217361' => 'rch', 'RcHm_v2.0_Chr7g0220131' => 'rch', 'RcHm_v2.0_Chr7g0220301' => 'rch', 'RcHm_v2.0_Chr7g0221391' => 'rch', 'RcHm_v2.0_Chr7g0221411' => 'rch', 'Rhsim01G0208800' => 'rsi', 'Rhsim03G0081800' => 'rsi', 'Rhsim04G0136300' => 'rsi', 'Rhsim05G0115600' => 'rsi', 'Rhsim05G0115700' => 'rsi', 'Rhsim05G0115900' => 'rsi', 'Rhsim06G0001800' => 'rsi', 'Sabra01G0173500' => 'sbr', 'Sabra02G0001900' => 'sbr', 'Sabra04G0129200' => 'sbr', 'Sabra05G0199900' => 'sbr', 'Sabra06G0091000' => 'sbr', 'SalBow3G0056' => 'sbo', 'Sc02g0001160' => 'sci', 'Sc03g0004970' => 'sci', 'Sc06g0007800' => 'sci', 'Sc12g0004120' => 'sci', 'Sc21g0004680' => 'sci', 'Sed0005680' => 'sed', 'Sed0005829' => 'sed', 'Sed0008301' => 'sed', 'Sed0008858' => 'sed', 'Sed0009620' => 'sed', 'Sed0012472' => 'sed', 'Sed0012640' => 'sed', 'Sed0015061' => 'sed', 'Sed0015991' => 'sed', 'Sed0021626' => 'sed', 'Sed0023226' => 'sed', 'Sed0026827' => 'sed', 'SEGI_05357' => 'sgi', 'SEGI_10594' => 'sgi', 'SEGI_13823' => 'sgi', 'SEGI_19846' => 'sgi', 'SEGI_25881' => 'sgi', 'SEGI_33781' => 'sgi', 'SEGI_40058' => 'sgi', 'SGA_v2.0_scaffold131G34405' => 'sas', 'SGA_v2.0_scaffold165G38271' => 'sas', 'SGA_v2.0_scaffold220G42612' => 'sas', 'SGA_v2.0_scaffold40G15412' => 'sas', 'SGA_v2.0_scaffold93G28367' => 'sas', 'SHI24519' => 'shi', 'SMO143G0099' => 'smo', 'SMO143G0278' => 'smo', 'SMO196G0063' => 'smo', 'SMO307G0091' => 'smo', 'SMO364G0142' => 'smo', 'SMO364G0945' => 'smo', 'Solyc01g103090.4' => 'sly', 'Solyc01g103100.3' => 'sly', 'Solyc10g083640.2' => 'sly', 'Solyc11g066830.2' => 'sly', 'Sopen01g045500' => 'spe', 'Sopen01g045510' => 'spe', 'Sopen01g045520' => 'spe', 'Sopen10g033110' => 'spe', 'Sopen11g026540' => 'spe', 'Sp1g08910' => 'spa', 'Sp1g08920' => 'spa', 'Sp1g23860' => 'spa', 'Sp2g07520' => 'spa', 'Sp6g10930' => 'spa', 'TAR381G0334' => 'tar', 'TAR381G1332' => 'tar', 'TAR623G1115' => 'tar', 'TAR625G0776' => 'tar', 'TAR628G1213' => 'tar', 'TAR633G0835' => 'tar', 'TAR633G2522' => 'tar', 'TAR636G0528' => 'tar', 'TAR636G2699' => 'tar', 'THA.LOC104806867' => 'tha', 'THA.LOC104810192' => 'tha', 'THA.LOC104810194' => 'tha', 'THA.LOC104810898' => 'tha', 'THA.LOC104813185' => 'tha', 'THA.LOC104821580' => 'tha', 'Thecc.01G268200' => 'tca', 'Thecc.06G016900' => 'tca', 'Thecc.06G017100' => 'tca', 'Thecc.09G292400' => 'tca', 'Thecc.09G292500' => 'tca', 'Thhalv10002611m.g' => 'esa', 'Thhalv10003254m.g' => 'esa', 'Thhalv10008280m.g' => 'esa', 'Thhalv10008625m.g' => 'esa', 'Thhalv10009354m.g' => 'esa', 'TPR.G10244' => 'tpr', 'TPR.G2096' => 'tpr', 'TPR.G22369' => 'tpr', 'TPR.G32393' => 'tpr', 'TPR.G5962' => 'tpr', 'TWI14G0421' => 'twi', 'TWI56G0915' => 'twi', 'TWI59G0191' => 'twi', 'TWI74G1116' => 'twi', 'TWI75G0350' => 'twi', 'TWI77G0099' => 'twi', 'TWI77G0549' => 'twi', 'unitig_0.g1493' => 'ugi', 'unitig_22.g6647' => 'ugi', 'unitig_37.g12401' => 'ugi', 'unitig_578.g15961' => 'ugi', 'unitig_578.g16244' => 'ugi', 'unitig_747.g21964' => 'ugi', 'unitig_8.g3291' => 'ugi', 'vmacro07368' => 'vma', 'vmacro07369' => 'vma', 'vmacro08814' => 'vma', 'vmacro14375' => 'vma', 'vmacro19831' => 'vma', 'vmacro19833' => 'vma', 'VMungo0540G1910' => 'vmu', 'VMungo1080G0198' => 'vmu', 'VMungo1080G0212' => 'vmu', 'VMungo1215G2691' => 'vmu', 'VMungo1383G0204' => 'vmu', 'Zm00001eb116590' => 'zma', 'Zm00001eb137230' => 'zma', 'Zm00001eb182190' => 'zma', 'Zm00001eb243890' => 'zma', 'Zm00001eb243910' => 'zma', 'Zm00001eb295890' => 'zma', 'Zm00001eb316870' => 'zma', 'Zm00001eb343760' => 'zma', 'Zm00001eb378920' => 'zma' ) $gf_id = 'HOM05D000904' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000904' ) $data_identifier = 'HOM05D000904' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 10, 'cil' => (int) 7, 'cla' => (int) 12, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 17, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 9, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 13, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 12, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1